| 1 | Igor Antón Hernandez | Euskaltel | 5:04:26h |
| 2 | Alberto Contador | Saxo Bank | +33s |
| 3 | Vincenzo Nibali | Liquigas | +40s |
| 4 | Michele Scarponi | Lampre | +1:11m |
| 5 | Denis Menchov | Geox - TMC | +1:21m |
| 6 | John Gadret | Decathlon AG2R La Mondiale Team | +1:38m |
| 7 | Mikel Nieve | Euskaltel | +1:52m |
| 8 | Hubert Dupont | Decathlon AG2R La Mondiale Team | +1:55m |
| 9 | Kanstantsin Siutsou | HTC Highroad | +2:05m |
| 10 | José Rujano | Drone Hopper - Androni Giocattoli | +2:11m |
| 11 | Joaquím Rodríguez Oliver | Team Katusha Alpecin | +2:24m |
| 12 | Steven Kruijswijk | Rabobank | +2:40m |
| 13 | Przemyslaw Niemiec | Lampre | +2:57m |
| 14 | Paolo Tiralongo | Astana Qazaqstan Team | +3:29m |
| 15 | Peter Stetina | Garmin | +3:29m |
| 16 | Roman Kreuziger | Astana Qazaqstan Team | +3:32m |
| 17 | David Arroyo | Movistar Team | +3:39m |
| 18 | Matteo Carrara | Vacansoleil | +3:55m |
| 19 | Christophe Le Mével | Garmin | +4:00m |
| 20 | Dario Cataldo | Quick Step | +4:03m |
| 21 | Tiago Machado | Team Radioshack | +4:03m |
| 22 | Vasil Kiryienka | Movistar Team | +4:30m |
| 23 | Marcel Wyss | Geox - TMC | +5:05m |
| 24 | Jan Bakelants | Omega Pharma Lotto | +5:07m |
| 25 | Ivan Rovny | Team Radioshack | +5:07m |
| 26 | Emanuele Sella | Drone Hopper - Androni Giocattoli | +5:18m |
| 27 | Jesus Hernandez Blazquez | Saxo Bank | +5:23m |
| 28 | Vladimir Miholjevic | Acqua & Sapone | +5:27m |
| 29 | Giovanni Visconti | Farnese Vini | +5:27m |
| 30 | Daniel Moreno | Team Katusha Alpecin | +5:32m |
| 31 | Sergio Pardilla Bellon | Movistar Team | +5:53m |
| 32 | Bram Tankink | Rabobank | +5:54m |
| 33 | Diego Ulissi | Lampre | +5:54m |
| 34 | Rinaldo Nocentini | Decathlon AG2R La Mondiale Team | +5:54m |
| 35 | Marco Pinotti | HTC Highroad | +5:54m |
| 36 | Thomas Lövkvist | Ineos Grenadiers | +6:04m |
| 37 | Johann Tschopp | BMC Racing Team | +6:04m |
| 38 | Matteo Rabottini | Farnese Vini | +6:43m |
| 39 | Eduard Vorganov | Team Katusha Alpecin | +6:57m |
| 40 | Francis De Greef | Omega Pharma Lotto | +7:17m |
| 41 | Danilo Di Luca | Team Katusha Alpecin | +7:26m |
| 42 | Dario Cioni | Ineos Grenadiers | +7:57m |
| 43 | Jerome Pineau | Quick Step | +8:06m |
| 44 | Bart de Clercq | Omega Pharma Lotto | +8:10m |
| 45 | Matteo Montaguti | Decathlon AG2R La Mondiale Team | +8:35m |
| 46 | Maxim Belkov | Vacansoleil | +9:03m |
| 47 | Carlos Sastre | Geox - TMC | +9:14m |
| 48 | Johnny Hoogerland | Vacansoleil | +9:54m |
| 49 | Robert Kiserlovski | Astana Qazaqstan Team | +10:08m |
| 50 | Evgeni Petrov | Astana Qazaqstan Team | +10:14m |
| 51 | Jorge Azanza Soto | Euskaltel | +10:29m |
| 52 | Gianluca Brambilla | Colnago-CSF Inox | +11:24m |
| 53 | Aliaksandr Kuchynski | Team Katusha Alpecin | +11:27m |
| 54 | Gorazd Stangelj | Astana Qazaqstan Team | +11:27m |
| 55 | Stefano Pirazzi | Colnago-CSF Inox | +11:32m |
| 56 | Massimo Codol | Acqua & Sapone | +11:58m |
| 57 | Fumiyuki Beppu | Team Radioshack | +12:07m |
| 58 | Cayetano José Sarmiento | Acqua & Sapone | +12:10m |
| 59 | Sebastian Lang | Omega Pharma Lotto | +12:12m |
| 60 | Stef Clement | Rabobank | +12:12m |
| 61 | Giampaolo Caruso | Team Katusha Alpecin | +12:23m |
| 62 | Cristiano Salerno | Liquigas | +12:30m |
| 63 | Domenico Pozzovivo | Colnago-CSF Inox | +12:32m |
| 64 | Francesco Masciarelli | Astana Qazaqstan Team | +12:41m |
| 65 | Daniel Navarro | Saxo Bank | +12:56m |
| 66 | David Millar | Garmin | +12:58m |
| 67 | Valerio Agnoli | Liquigas | +13:05m |
| 68 | Eros Capecchi | Liquigas | +13:05m |
| 69 | Gert Dockx | Omega Pharma Lotto | +13:15m |
| 70 | Alessandro Spezialetti | Lampre | +13:29m |
| 71 | Yaroslav Popovych | Team Radioshack | +13:32m |
| 72 | Carlos José Ochoa | Drone Hopper - Androni Giocattoli | +13:34m |
| 73 | Joan Horrach | Team Katusha Alpecin | +13:36m |
| 74 | Patrick Gretsch | HTC Highroad | +13:39m |
| 75 | Marco Frapporti | Colnago-CSF Inox | +13:39m |
| 76 | Lars Petter Nordhaug | Ineos Grenadiers | +14:25m |
| 77 | Michael Barry | Ineos Grenadiers | +14:52m |
| 78 | Peter Kennaugh | Ineos Grenadiers | +14:54m |
| 79 | Morris Possoni | Ineos Grenadiers | +14:54m |
| 80 | Cyril Dessel | Decathlon AG2R La Mondiale Team | +14:54m |
| 81 | Josep Jufré | Astana Qazaqstan Team | +14:54m |
| 82 | Philip Deignan | Team Radioshack | +14:54m |
| 83 | Daniele Righi | Lampre | +15:14m |
| 84 | Thomas Peterson | Garmin | +15:14m |
| 85 | Ben Gastauer | Decathlon AG2R La Mondiale Team | +15:32m |
| 86 | David Blanco Rodriguez | Geox - TMC | +15:32m |
| 87 | Filippo Savini | Colnago-CSF Inox | +15:36m |
| 88 | Carlos Alberto Betancourt Gomez | Acqua & Sapone | +15:46m |
| 89 | Iñaki Isasi Flores | Euskaltel | +16:13m |
| 90 | Richie Porte | Saxo Bank | +16:13m |
| 91 | Kjell Carlström | Ineos Grenadiers | +16:13m |
| 92 | Dimitry Kozontchuk | Geox - TMC | +16:13m |
| 93 | Pablo Lastras Garcia | Movistar Team | +16:13m |
| 94 | Bjorn Selander | Team Radioshack | +16:13m |
| 95 | Alexsandr Dyachenko | Astana Qazaqstan Team | +16:20m |
| 96 | José Rodolfo Serpa Pérez | Drone Hopper - Androni Giocattoli | +16:22m |
| 97 | Sylwester Szmyd | Liquigas | +16:26m |
| 98 | Yuri Krivtsov | Decathlon AG2R La Mondiale Team | +16:33m |
| 99 | Federico Canuti | Colnago-CSF Inox | +16:36m |
| 100 | Addy Engels | Quick Step | +16:37m |
| 101 | Craig Lewis | HTC Highroad | +16:40m |
| 102 | Mauricio Ardila | Geox - TMC | +16:46m |
| 103 | Luca Mazzanti | Farnese Vini | +17:02m |
| 104 | Stefano Garzelli | Acqua & Sapone | +17:12m |
| 105 | Maxim Gourov | Astana Qazaqstan Team | +17:12m |
| 106 | Fabio Sabatini | Liquigas | +17:12m |
| 107 | Alessandro Vanotti | Liquigas | +17:12m |
| 108 | Branislau Samoilau | Movistar Team | +17:12m |
| 109 | Leonardo Giordani | Farnese Vini | +17:12m |
| 110 | Ángel Vicioso | Drone Hopper - Androni Giocattoli | +17:12m |
| 111 | Michał Gołaś | Vacansoleil | +17:12m |
| 112 | Davide Malacarne | Quick Step | +17:12m |
| 113 | Pieter Weening | Rabobank | +17:37m |
| 114 | Luis Pasamontes | Movistar Team | +17:41m |
| 115 | Alberto Losada | Team Katusha Alpecin | +17:41m |
| 116 | Javier Aramendía Lorente | Euskaltel | +17:50m |
| 117 | Olivier Kaisen | Omega Pharma Lotto | +18:08m |
| 118 | Jussi Veikkanen | Omega Pharma Lotto | +18:11m |
| 119 | Jos van Emden | Rabobank | +18:11m |
| 120 | Simon Zahner | BMC Racing Team | +18:11m |
| 121 | Matthias Frank | BMC Racing Team | +18:14m |
| 122 | Oscar Gatto | Farnese Vini | +18:14m |
| 123 | Davide Ricci Bitti | Farnese Vini | +18:14m |
| 124 | Mikaël Chérel | Decathlon AG2R La Mondiale Team | +18:14m |
| 125 | Simone Stortoni | Colnago-CSF Inox | +18:14m |
| 126 | Robert Hunter | Team Radioshack | +18:14m |
| 127 | Alan Marangoni | Liquigas | +18:19m |
| 128 | Jürgen Van de Walle | Quick Step | +18:19m |
| 129 | Russell Downing | Ineos Grenadiers | +18:19m |
| 130 | Lars Ytting Bak | HTC Highroad | +18:28m |
| 131 | Rick Flens | Rabobank | +18:28m |
| 132 | Alessandro De Marchi | Drone Hopper - Androni Giocattoli | +18:37m |
| 133 | Carlos Oyarzun | Movistar Team | +18:39m |
| 134 | Danilo Wyss | BMC Racing Team | +18:39m |
| 135 | Julien Berard | Decathlon AG2R La Mondiale Team | +18:39m |
| 136 | Pavel Brutt | Team Katusha Alpecin | +18:39m |
| 137 | Klaas Lodewyck | Omega Pharma Lotto | +18:46m |
| 138 | Ignatas Konovalovas | Movistar Team | +18:50m |
| 139 | Dennis van Winden | Rabobank | +18:56m |
| 140 | Volodymyr Gustov | Saxo Bank | +18:56m |
| 141 | Brett Lancaster | Garmin | +18:56m |
| 142 | Juan José Oroz Ugalde | Euskaltel | +19:17m |
| 143 | Claudio Corioni | Acqua & Sapone | +19:17m |
| 144 | Pierre Cazaux | Euskaltel | +19:17m |
| 145 | Murilo Antonio Fischer | Garmin | +19:20m |
| 146 | Simon Špilak | Lampre | +19:20m |
| 147 | Alberto Ongarato | Vacansoleil | +19:23m |
| 148 | Francesco Reda | Quick Step | +19:25m |
| 149 | Tiziano Dall'Antonia | Liquigas | +19:27m |
| 150 | Frederik Veuchelen | Vacansoleil | +19:32m |
| 151 | Elia Favilli | Farnese Vini | +19:42m |
| 152 | Marco Marzano | Lampre | +19:51m |
| 153 | Giampaolo Cheula | Geox - TMC | +20:01m |
| 154 | Giairo Ermeti | Drone Hopper - Androni Giocattoli | +20:16m |
| 155 | Roberto Ferrari | Drone Hopper - Androni Giocattoli | +20:19m |
| 156 | Ruggero Marzoli | Acqua & Sapone | +20:19m |
| 157 | Fabio Taborre | Acqua & Sapone | +20:28m |
| 158 | Matthew Wilson | Garmin | +20:28m |
| 159 | Mirko Selvaggi | Vacansoleil | +20:48m |
| 160 | Chad Beyer | BMC Racing Team | +20:48m |
| 161 | Sergey Lagutin | Vacansoleil | +20:55m |
| 162 | Daniel Sesma | Euskaltel | +20:55m |
| 163 | Alex Rasmussen | HTC Highroad | +21:10m |
| 164 | František Rabon | HTC Highroad | +21:10m |
| 165 | Matteo Tosatto | Saxo Bank | +21:49m |
| 166 | Manuel Cardoso | Team Radioshack | +21:49m |
| 167 | Michael Mørkøv | Saxo Bank | +21:49m |
| 168 | Kasper Klostergaard | Saxo Bank | +21:49m |
| 169 | Laurent Didier | Saxo Bank | +21:49m |
| 170 | Cameron Meyer | Garmin | +21:49m |
| 171 | Miguel Minguez | Euskaltel | +21:49m |
| 172 | Alexander Kristoff | BMC Racing Team | +22:23m |
| 173 | Kevin Seeldraeyers | Quick Step | +26:54m |
